FlxQTL.jl
A package for a Flexible multivariate linear mixed model (MLMM) suitable for QTL (Quantitative Trait Loci) analysis of structured multivariate traits.
Package Features
- Genome scan (1D, 2D) for univariate, multivariate trait(s), and genotype (probability) data
- LOCO (Leave One Chromosome Out) support for genome scan
- Computation for Genetic (or Climatic) Relatedness matrix (or kinship)
- CPU parallelization
Guide
Manual
The descriptions of functions and types arranged by module.
Index
FlxQTL.EcmNestrvFlxQTL.FlxQTLFlxQTL.GRMFlxQTL.MLMFlxQTL.UtilFlxQTL.flxMLMMFlxQTL.MLM.EstimatFlxQTL.Util.MarkersFlxQTL.GRM.kinship4wayFlxQTL.GRM.kinshipCtrFlxQTL.GRM.kinshipGsFlxQTL.GRM.kinshipLinFlxQTL.GRM.kinshipLocoFlxQTL.GRM.kinshipManFlxQTL.GRM.kinshipStdFlxQTL.GRM.shrinkgFlxQTL.GRM.shrinkgLocoFlxQTL.MLM.mGLMFlxQTL.Util.Y_huberFlxQTL.Util.array2matFlxQTL.Util.getFinoidxFlxQTL.Util.getGenoidxFlxQTL.Util.lod2logPFlxQTL.Util.mat2arrayFlxQTL.Util.mat2vecFlxQTL.Util.newMarkersFlxQTL.Util.ordrMarkersFlxQTL.Util.setSeedFlxQTL.Util.sortBycMFlxQTL.flxMLMM.K2EigFlxQTL.flxMLMM.K2eigFlxQTL.flxMLMM.envScanFlxQTL.flxMLMM.gene2ScanFlxQTL.flxMLMM.geneScanFlxQTL.flxMLMM.getKcFlxQTL.flxMLMM.permTest